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consensus-interpret

95 / 100 · Low risk

Fine to try.

By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1

LLM-grounded biological interpretation of a verified typed consensus run. Reads the typed run dir + the original adata, runs inline per-cluster DE, looks up markers in a bundled tissue-keyed marker DB, and asks the chair LLM to (γ) name each cluster's likely cell type with mandatory marker citations and (β) recommend top-3 next-step skills with mandatory evidence_refs. Output banner [A+I: Interpreted on verified consensus]. Failure-mode contract per ADR 0012.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'consensus-interpret' ] || [ -L ~/.agents/skills/'consensus-interpret' ]; then echo 'A skill folder named consensus-interpret already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/External_Collections/OmicsClaw/skills/spatial/consensus-interpret' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/External_Collections/OmicsClaw/skills/spatial/consensus-interpret' ~/.agents/skills/'consensus-interpret' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'consensus-interpret' ~/.claude/skills/'consensus-interpret' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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