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motif-analysis
90 / 100 · Low risk
Fine to try.
By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · other · 36 stars · scanned at commit fde6cd1
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this.
Found in 20 places.
Show 17 more
- Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 99
annotatePeaks.pl peaks.bed hg38 -m motif.motif > annotated.txt - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 109
compareMotifs.pl motifs.motif output_dir/ -known - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 116
seq2profile.pl CACGTG 4 > MYC.motif - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 127
conda install -c bioconda meme - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 134
bedtools getfasta -fi genome.fa -bed peaks.bed -fo peaks.fa - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 145
meme peaks.fa -dna -oc meme_output -mod zoops -nmotifs 10 -minw 6 -maxw 20 - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 169
meme-chip -oc meme_chip_output -db motif_database.meme peaks.fa - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 183
dreme -oc dreme_output -p peaks.fa -n background.fa - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 190
centrimo -oc centrimo_output peaks.fa motif_database.meme - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 197
tomtom -oc tomtom_output discovered.meme database.meme - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 204
fimo --oc fimo_output motif.meme sequences.fa - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 216
ls /path/to/homer/data/knownTFs/ - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 226
wget https://jaspar.genereg.net/download/data/2024/CORE/JASPAR2024_CORE_vertebrates_non-redundant_pfms_meme.txt - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 236
wget https://hocomoco11.autosome.org/final_bundle/hocomoco11/core/HUMAN/mono/HOCOMOCOv11_core_HUMAN_mono_meme_format.meme - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 282
set -euo pipefail - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 314
findMotifsGenome.pl footprints.bed hg38 footprint_motifs/ \ - Skills/Epigenomics/chip-seq/motif-analysis/SKILL.md, line 328
motif2Logo.pl motif.motif > logo.eps
Sends data to these websites: jaspar.genereg.net, hocomoco11.autosome.org
The author does not mention this.
Found in 2 places.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'motif-analysis' ] || [ -L ~/.agents/skills/'motif-analysis' ]; then echo 'A skill folder named motif-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Epigenomics/chip-seq/motif-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Epigenomics/chip-seq/motif-analysis' ~/.agents/skills/'motif-analysis' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'motif-analysis' ~/.claude/skills/'motif-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- shows the score of its lowest-scoring skill.

[](https://zalavijaysinh.github.io/skilltrust/repos/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | fde6cd1 | 90 |
| 2026-11-07 | 839c35a | 90 |