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medsam2-3d-segmentation

85 / 100 · Low risk

Fine to try.

By mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills- (GitHub) · media · 36 stars · scanned at commit fde6cd1

Operate MedSAM2 for promptable segmentation of 3D medical images and medical videos, including CT lesion propagation, MRI volumes, RECIST-guided prompts, efficient CPU-oriented variants, training, and 3D Slicer integration. Use when generating or validating volumetric masks from sparse prompts or propagating masks through image slices or video frames.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'medsam2-3d-segmentation' ] || [ -L ~/.agents/skills/'medsam2-3d-segmentation' ]; then echo 'A skill folder named medsam2-3d-segmentation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/mdbabumiamssm/LLMs-Universal-Life-Science-and-Clinical-Skills-' "$d" && git -C "$d" checkout --quiet 'fde6cd1025d8a9300ad783b3d6696fa708a5cdb0' -- 'Skills/Clinical/Medical_Imaging/medsam2-3d-segmentation' && mkdir -p ~/.agents/skills && cp -R "$d"/'Skills/Clinical/Medical_Imaging/medsam2-3d-segmentation' ~/.agents/skills/'medsam2-3d-segmentation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'medsam2-3d-segmentation' ~/.claude/skills/'medsam2-3d-segmentation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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