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single-cell-preprocessing-with-omicverse

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Walk through omicverse's single-cell preprocessing tutorials to QC PBMC3k data, normalise counts, detect HVGs, and run PCA/embedding pipelines on CPU, CPU–GPU mixed, or GPU stacks.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'single-cell-preprocessing-with-omicverse' ] || [ -L ~/.agents/skills/'single-cell-preprocessing-with-omicverse' ]; then echo 'A skill folder named single-cell-preprocessing-with-omicverse already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/single-preprocessing' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/single-preprocessing' ~/.agents/skills/'single-cell-preprocessing-with-omicverse' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'single-cell-preprocessing-with-omicverse' ~/.claude/skills/'single-cell-preprocessing-with-omicverse' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• BioTender-max/awesome-bio-agent-skills/skills/openclaw/single-preprocessing