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gwas-catalog-region-fetch

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Check before installing.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. Use when an agent needs GWAS beta / SE / p-value for every variant in a window for one specific study (GCST accession). Input: accession, chromosome, start, end. Output: harmonised TSV slice in canonical format.

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (other) that look related. Check that one does what you need.

• 95 Low riskvariant-gwas-associationsInternScience/DrClaw · 172 stars
• 95 Low riskgwas-lookupstanfish06/skillquarium · 12 stars
• 100 Low riskgwas-catalogexon-research/genomi · 492 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'gwas-catalog-region-fetch' ] || [ -L ~/.agents/skills/'gwas-catalog-region-fetch' ]; then echo 'A skill folder named gwas-catalog-region-fetch already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/gwas-catalog-region-fetch' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/gwas-catalog-region-fetch' ~/.agents/skills/'gwas-catalog-region-fetch' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'gwas-catalog-region-fetch' ~/.claude/skills/'gwas-catalog-region-fetch' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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