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eqtl-catalogue-region-fetch

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By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, end, optional molecular_trait_id. Output: harmonised TSV slice.

Works with any agent that supports SKILL.md skills.

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What this skill can do

Safer alternatives

Low-risk skills in the same category (other) that look related. Check that one does what you need.

• 95 Low riskregion-gene-elementsInternScience/DrClaw · 172 stars
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• 100 Low riskDynamic Screen Region NormalizationECNU-ICALK/AutoSkill · 613 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'eqtl-catalogue-region-fetch' ] || [ -L ~/.agents/skills/'eqtl-catalogue-region-fetch' ]; then echo 'A skill folder named eqtl-catalogue-region-fetch already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/eqtl-catalogue-region-fetch' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/eqtl-catalogue-region-fetch' ~/.agents/skills/'eqtl-catalogue-region-fetch' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'eqtl-catalogue-region-fetch' ~/.claude/skills/'eqtl-catalogue-region-fetch' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• stanfish06/skillquarium/skills/eqtl-catalogue-region-fetch