deepspot-m

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Generate transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Use when you need spatial gene expression in log1p-CPM for 224x224 tiles at about 20x, want to query protein-coding genes by symbol instead of a fixed panel, or want to run prediction across a whole slide after tiling with histolab.

Works with any agent that supports SKILL.md skills.

What this skill can do

Downloads and installs other software

The author does not mention this.

Found in 3 places.

skills/deepspot-m/SKILL.md, line 40uv pip install deepspotm==1.0.0
skills/deepspot-m/SKILL.md, line 107"DeepSpot-M is unavailable. Install it with `uv pip install deepspotm==1.0.0`, request "
skills/deepspot-m/references/api.md, line 162"DeepSpot-M is unavailable. Install it with `uv pip install deepspotm==1.0.0`, request "

Runs commands on your computer

The author does not mention this. Expected for a coding skill.

Found in 2 places.

skills/deepspot-m/SKILL.md, line 40uv pip install deepspotm==1.0.0
skills/deepspot-m/SKILL.md, line 54huggingface-cli login

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'deepspot-m' ] || [ -L ~/.agents/skills/'deepspot-m' ]; then echo 'A skill folder named deepspot-m already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/deepspot-m' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/deepspot-m' ~/.agents/skills/'deepspot-m' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'deepspot-m' ~/.claude/skills/'deepspot-m' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Date	Version	Score
2026-11-11	`908229c`	80

Also found in

Identical copies of this skill exist at:

sharkrebel/everything-everywhere-for-antigravity/skills/deepspot-m