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bioconductor-bridge
92 / 100 · Low risk
Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.
By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c
Bioconductor package discovery, workflow recommendation, setup inspection, and starter code generation grounded
Works with any agent that supports SKILL.md skills.
What this skill can do
Runs commands on your computer
The author does not mention this. Expected for a coding skill.
Found in 23 places.
Show 17 more
- skills/bioconductor-bridge/bioc_recommender.py, line 324
return subprocess.run(cmd, **kwargs) - skills/bioconductor-bridge/bioc_recommender.py, line 387
def _run_rscript(expr: str, timeout: int = 600) -> subprocess.CompletedProcess[str]: - skills/bioconductor-bridge/bioconductor_bridge.py, line 131
def run_process(cmd: list[str], **kwargs) -> subprocess.CompletedProcess[str]: - skills/bioconductor-bridge/bioconductor_bridge.py, line 132
"""Wrapper for subprocess.run so tests can patch it cleanly.""" - skills/bioconductor-bridge/bioconductor_bridge.py, line 133
return subprocess.run(cmd, **kwargs) - skills/bioconductor-bridge/bioconductor_bridge.py, line 154
def _run_rscript(expr: str, timeout: int = 120) -> subprocess.CompletedProcess[str] | None: - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 130
'cat(R.version.string)': subprocess.CompletedProcess([], 0, stdout="R 4.5.0\n", stderr=""), - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 131
'cat(requireNamespace("BiocManager", quietly = TRUE))': subprocess.CompletedProcess([], 0, stdout="TRUE\n", stderr=""), - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 136
return subprocess.CompletedProcess([], 0, stdout="biocmanager_version=1.30.27\nbioconductor_version=3.23\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 138
return subprocess.CompletedProcess([], 0, stdout="remote_validation=ok\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 140
return subprocess.CompletedProcess([], 0, stdout="DESeq2=TRUE\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 141
return outputs.get(expr, subprocess.CompletedProcess([], 0, stdout="", stderr="")) - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 153
return subprocess.CompletedProcess([], 0, stdout="R 4.5.0\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 155
return subprocess.CompletedProcess([], 0, stdout="TRUE\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 157
return subprocess.CompletedProcess([], 0, stdout="biocmanager_version=1.30.27\nbioconductor_version=3.23\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 159
return subprocess.CompletedProcess([], 0, stdout="remote_validation=ok\n", stderr="") - skills/bioconductor-bridge/tests/test_bioconductor_bridge.py, line 161
return subprocess.CompletedProcess([], 0, stdout="MotifPeeker=TRUE\n", stderr="")
and 3 more places
Connects to the internet
This is disclosed by the author in the skill's SKILL.md or README.
Found in 2 places.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'bioconductor-bridge' ] || [ -L ~/.agents/skills/'bioconductor-bridge' ]; then echo 'A skill folder named bioconductor-bridge already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bioconductor-bridge' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bioconductor-bridge' ~/.agents/skills/'bioconductor-bridge' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bioconductor-bridge' ~/.claude/skills/'bioconductor-bridge' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-11 | 908229c | 92 |
Also found in
Identical copies of this skill exist at:
- BioTender-max/awesome-bio-agent-skills/skills/clawbio/bioconductor-bridge
- stanfish06/skillquarium/skills/bioconductor-bridge