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bio-workflow-management-snakemake-workflows

82 / 100 · Low risk

Fine to try. Some of what it can do is expected: a devops skill usually runs commands, installs tools and uses cloud credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · devops · 17 stars · scanned at commit 908229c

Authors reproducible bioinformatics pipelines with Snakemake - rules wired by output-file pattern, wildcards and expand() for sample fan-out, checkpoints for runtime-unknown outputs, resource/retry escalation, and conda/container software deployment on HPC and cloud. Use when deciding rule-based (Snakemake) vs channel/dataflow (Nextflow) authoring; wiring rules by OUTPUT-file pattern rather than imperative order; using wildcards + expand() for sample fan-out and constraining them to stop silent…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-workflow-management-snakemake-workflows' ] || [ -L ~/.agents/skills/'bio-workflow-management-snakemake-workflows' ]; then echo 'A skill folder named bio-workflow-management-snakemake-workflows already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-workflow-management-snakemake-workflows' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-workflow-management-snakemake-workflows' ~/.agents/skills/'bio-workflow-management-snakemake-workflows' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-workflow-management-snakemake-workflows' ~/.claude/skills/'bio-workflow-management-snakemake-workflows' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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