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bio-workflow-management-nextflow-pipelines

82 / 100 · Low risk

Fine to try. Some of what it can do is expected: a devops skill usually runs commands, installs tools and uses cloud credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · devops · 17 stars · scanned at commit 908229c

Authors reproducible Nextflow DSL2 pipelines built on reactive dataflow, where processes communicate only through channels and execution order is not guaranteed. Use when deciding channel/dataflow (Nextflow) vs rule-based (Snakemake) authoring; wiring queue vs value channels and fixing shared-reference exhaustion with .first(); composing DSL2 modules and subworkflows with take/main/emit; selecting container/conda profiles and pinning images by digest for portability across local/SLURM/LSF/AWS B…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-workflow-management-nextflow-pipelines' ] || [ -L ~/.agents/skills/'bio-workflow-management-nextflow-pipelines' ]; then echo 'A skill folder named bio-workflow-management-nextflow-pipelines already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-workflow-management-nextflow-pipelines' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-workflow-management-nextflow-pipelines' ~/.agents/skills/'bio-workflow-management-nextflow-pipelines' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-workflow-management-nextflow-pipelines' ~/.claude/skills/'bio-workflow-management-nextflow-pipelines' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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