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bio-uniprot-access
82 / 100 · Low risk
Fine to try.
By lilinji/GeneTind-Life-Skills (GitHub) · design · 17 stars · scanned at commit 908229c
Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes. Use when fetching UniProtKB entries, navigating the JSON schema, choosing between UniProtKB/UniRef/UniParc/Proteomes resources, deciding stream vs search endpoint for batch retrieval, running ID-mapping jobs with the async pattern, handling isoform suffixes, or filtering reviewed Swiss-Prot vs auto-annotated TrEMBL. Encodes the legacy URL …
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: rest.uniprot.org
This is disclosed by the author in the skill's SKILL.md or README.
Found in 22 places.
Show 17 more
- skills/bio-uniprot-access/SKILL.md, line 163
iso = requests.get('https://rest.uniprot.org/uniprotkb/P04637-2.fasta').text - skills/bio-uniprot-access/SKILL.md, line 204
r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession}.json') - skills/bio-uniprot-access/SKILL.md, line 238
r = requests.get(url, params=params) - skills/bio-uniprot-access/SKILL.md, line 262
r = requests.get(url, params=params, stream=True) - skills/bio-uniprot-access/SKILL.md, line 287
submit = requests.post('https://rest.uniprot.org/idmapping/run', - skills/bio-uniprot-access/SKILL.md, line 295
status = requests.get(f'https://rest.uniprot.org/idmapping/status/{job_id}') - skills/bio-uniprot-access/SKILL.md, line 307
results = requests.get(f'https://rest.uniprot.org/idmapping/results/{job_id}') - skills/bio-uniprot-access/SKILL.md, line 336
r = requests.get(url, stream=True) - skills/bio-uniprot-access/SKILL.md, line 352
r = requests.get(f'https://rest.uniprot.org/uniref/{uniref_id}.json') - skills/bio-uniprot-access/examples/isoforms_and_xrefs.py, line 11
r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession}.json') - skills/bio-uniprot-access/examples/isoforms_and_xrefs.py, line 25
r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession_with_suffix}.fasta') - skills/bio-uniprot-access/examples/isoforms_and_xrefs.py, line 31
r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession}.json') - skills/bio-uniprot-access/examples/isoforms_and_xrefs.py, line 43
with requests.get(url, stream=True) as r: - skills/bio-uniprot-access/examples/uniprot_query.py, line 10
r = requests.get(f'https://rest.uniprot.org/uniprotkb/{accession}.json') - skills/bio-uniprot-access/examples/uniprot_query.py, line 31
r = requests.get(url, params=params); r.raise_for_status() - skills/bio-uniprot-access/examples/uniprot_query.py, line 39
r = requests.get(url, params=params, stream=True); r.raise_for_status() - skills/bio-uniprot-access/examples/uniprot_query.py, line 44
submit = requests.post('https://rest.uniprot.org/idmapping/run',
and 2 more places
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'bio-uniprot-access' ] || [ -L ~/.agents/skills/'bio-uniprot-access' ]; then echo 'A skill folder named bio-uniprot-access already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-uniprot-access' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-uniprot-access' ~/.agents/skills/'bio-uniprot-access' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-uniprot-access' ~/.claude/skills/'bio-uniprot-access' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)
Score history
| Date | Version | Score |
|---|
| 2026-11-11 | 908229c | 82 |