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bio-tcr-bcr-analysis-vdjtools-analysis

90 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Computes immune-repertoire diversity, clonal structure, overlap, and segment usage from TCR/BCR clonotype tables with VDJtools (immunarch as the modern R alternative). Use when deciding which diversity estimator answers a question (q=0 observed richness/chao1/chaoE, q=1 shannonWienerIndex, q=2 inverseSimpson as a Hill profile); normalizing sequencing depth before any cross-sample claim (DownSample or the resampled CalcDiversityStats table); choosing an overlap metric (depth-robust MorisitaHorn/…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-tcr-bcr-analysis-vdjtools-analysis' ] || [ -L ~/.agents/skills/'bio-tcr-bcr-analysis-vdjtools-analysis' ]; then echo 'A skill folder named bio-tcr-bcr-analysis-vdjtools-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-tcr-bcr-analysis-vdjtools-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-tcr-bcr-analysis-vdjtools-analysis' ~/.agents/skills/'bio-tcr-bcr-analysis-vdjtools-analysis' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-tcr-bcr-analysis-vdjtools-analysis' ~/.claude/skills/'bio-tcr-bcr-analysis-vdjtools-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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