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bio-tcr-bcr-analysis-mixcr-analysis

97 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Align V(D)J reads and assemble TCR/BCR clonotypes with MiXCR, driven by a chemistry-matched preset. Use when choosing/auditing the preset for a library (5'RACE/template-switch vs multiplex-primer amplicon -> rigid vs floating boundaries; RNA vs gDNA -> --rna/--dna; bulk vs 10x single-cell; UMI vs no-UMI -> tag pattern and barcode collapse; kit presets Takara/NEBNext/QIAseq/BD/MiLaboratory); assembling clonotypes by CDR3 vs VDJRegion; setting the reads-vs-UMI-vs-cell quantitation denominator; ex…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-tcr-bcr-analysis-mixcr-analysis' ] || [ -L ~/.agents/skills/'bio-tcr-bcr-analysis-mixcr-analysis' ]; then echo 'A skill folder named bio-tcr-bcr-analysis-mixcr-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-tcr-bcr-analysis-mixcr-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-tcr-bcr-analysis-mixcr-analysis' ~/.agents/skills/'bio-tcr-bcr-analysis-mixcr-analysis' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-tcr-bcr-analysis-mixcr-analysis' ~/.claude/skills/'bio-tcr-bcr-analysis-mixcr-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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