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bio-systems-biology-strain-design

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · design · 17 stars · scanned at commit 908229c

Computes metabolic-engineering strain designs on genome-scale models with StrainDesign (OptKnock, RobustKnock, minimal cut sets, OptCouple) and cameo (heuristic knockout and FSEOF over/under-expression targets), finding gene/reaction interventions that couple product formation to growth. Use when designing knockouts to overproduce a target chemical, choosing between OptKnock and RobustKnock, growth-coupling a product so evolution maintains it, computing minimal cut sets, finding amplification t…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-systems-biology-strain-design' ] || [ -L ~/.agents/skills/'bio-systems-biology-strain-design' ]; then echo 'A skill folder named bio-systems-biology-strain-design already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-systems-biology-strain-design' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-systems-biology-strain-design' ~/.agents/skills/'bio-systems-biology-strain-design' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-systems-biology-strain-design' ~/.claude/skills/'bio-systems-biology-strain-design' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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