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bio-systems-biology-model-curation

80 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · marketing · 17 stars · scanned at commit 908229c

Validates, gap-fills, and standardizes genome-scale metabolic models using memote for consistency and annotation scoring and COBRApy for manual curation, including mass/charge balance, energy-generating-cycle detection, dead-end resolution, GPR fixes, and SBML/SBO/MIRIAM annotation. Use when improving a draft model, gap-filling to a target medium, detecting erroneous ATP-from-nothing cycles, interpreting a memote score correctly (consistency vs biological validity), validating predictions again…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-systems-biology-model-curation' ] || [ -L ~/.agents/skills/'bio-systems-biology-model-curation' ]; then echo 'A skill folder named bio-systems-biology-model-curation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-systems-biology-model-curation' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-systems-biology-model-curation' ~/.agents/skills/'bio-systems-biology-model-curation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-systems-biology-model-curation' ~/.claude/skills/'bio-systems-biology-model-curation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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