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bio-structural-biology-structure-modification

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Modifies protein structures in place with Biopython Bio.PDB - transforms coordinates, strips waters/heteroatoms, overloads the B-factor column, renumbers, and builds entities. Use when applying a rotation matrix and needing to know whether it is row-convention (Entity.transform, Superimposer) or column-convention (REMARK 350 / _pdbx_struct_oper_list assembly operators) so geometry is not silently mirrored; when overloading B-factors with pLDDT/conservation for coloring and needing to preserve t…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-structural-biology-structure-modification' ] || [ -L ~/.agents/skills/'bio-structural-biology-structure-modification' ]; then echo 'A skill folder named bio-structural-biology-structure-modification already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-structural-biology-structure-modification' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-structural-biology-structure-modification' ~/.agents/skills/'bio-structural-biology-structure-modification' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-structural-biology-structure-modification' ~/.claude/skills/'bio-structural-biology-structure-modification' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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