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bio-spatial-transcriptomics-spatial-multiomics

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Integrates spatial RNA with a second modality (protein, ATAC, or histone marks) on spatial CITE-seq, DBiT-seq, spatial-ATAC, or Visium CytAssist data. Use when deciding vertical (same-pixel co-profiling -> WNN/MOFA joint factors) versus diagonal (serial adjacent sections -> registration via PASTE/STalign) integration; recognizing that modalities from serial sections are DIFFERENT cells so joint same-cell methods do not apply; handling a bounded antibody/feature panel where absence is uninformat…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-spatial-transcriptomics-spatial-multiomics' ] || [ -L ~/.agents/skills/'bio-spatial-transcriptomics-spatial-multiomics' ]; then echo 'A skill folder named bio-spatial-transcriptomics-spatial-multiomics already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-spatial-transcriptomics-spatial-multiomics' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-spatial-transcriptomics-spatial-multiomics' ~/.agents/skills/'bio-spatial-transcriptomics-spatial-multiomics' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-spatial-transcriptomics-spatial-multiomics' ~/.claude/skills/'bio-spatial-transcriptomics-spatial-multiomics' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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