← All skills

bio-spatial-transcriptomics-spatial-domains

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Identify spatially coherent tissue domains (regions like cortical layers, tumor vs stroma) in Visium, Visium HD, Xenium, MERFISH, Slide-seq, and Stereo-seq data with Squidpy, BANKSY, BayesSpace, STAGATE, and GraphST. Use when distinguishing a domain (a region with many cell types) from a cell type (one cell's identity) and a niche (local cell-type composition); choosing a domain method by tissue geometry (laminar/continuous vs high-resolution imaging vs non-contiguous); tuning the spatial-weigh…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-spatial-transcriptomics-spatial-domains' ] || [ -L ~/.agents/skills/'bio-spatial-transcriptomics-spatial-domains' ]; then echo 'A skill folder named bio-spatial-transcriptomics-spatial-domains already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-spatial-transcriptomics-spatial-domains' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-spatial-transcriptomics-spatial-domains' ~/.agents/skills/'bio-spatial-transcriptomics-spatial-domains' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-spatial-transcriptomics-spatial-domains' ~/.claude/skills/'bio-spatial-transcriptomics-spatial-domains' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/lilinji/GeneTind-Life-Skills.svg)](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)

Score history