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bio-single-cell-scatac-analysis

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Analyze single-cell ATAC-seq with Signac/ArchR (R) and SnapATAC2 (Python alternative). Use when processing scATAC fragments, choosing a framework, calling consensus peaks, running TF-IDF/LSI while diagnosing the depth component, scoring chromVAR motif deviations against GC-matched backgrounds, detecting homotypic vs heterotypic doublets, or deciding whether to binarize the count matrix.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-single-cell-scatac-analysis' ] || [ -L ~/.agents/skills/'bio-single-cell-scatac-analysis' ]; then echo 'A skill folder named bio-single-cell-scatac-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-single-cell-scatac-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-single-cell-scatac-analysis' ~/.agents/skills/'bio-single-cell-scatac-analysis' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-single-cell-scatac-analysis' ~/.claude/skills/'bio-single-cell-scatac-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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