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bio-single-cell-lineage-tracing

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Reconstructs single-cell lineage trees and clonal relationships from CRISPR/Cas9 scars, static expressed barcodes (LARRY/CellTag), or somatic mtDNA mutations using Cassiopeia, Startle, and CoSpar. Use when building a phylogeny from barcode scars, choosing a tree-reconstruction solver, handling homoplasy and dropout, grouping clones from mtDNA, integrating clone with transcriptomic state, or judging whether a state-based fate call is trustworthy.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-single-cell-lineage-tracing' ] || [ -L ~/.agents/skills/'bio-single-cell-lineage-tracing' ]; then echo 'A skill folder named bio-single-cell-lineage-tracing already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-single-cell-lineage-tracing' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-single-cell-lineage-tracing' ~/.agents/skills/'bio-single-cell-lineage-tracing' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-single-cell-lineage-tracing' ~/.claude/skills/'bio-single-cell-lineage-tracing' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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