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bio-single-cell-doublet-detection

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Detect and remove doublets (two or more cells in one droplet) from single-cell RNA-seq using scDblFinder (R), Scrublet (Python), and DoubletFinder (R). Use when flagging artificial intermediate populations before clustering, setting the expected doublet rate from recovered-cell counts, running detection per sample before integration, choosing between simulate-and-score methods, or interpreting a non-bimodal score histogram.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-single-cell-doublet-detection' ] || [ -L ~/.agents/skills/'bio-single-cell-doublet-detection' ]; then echo 'A skill folder named bio-single-cell-doublet-detection already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-single-cell-doublet-detection' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-single-cell-doublet-detection' ~/.agents/skills/'bio-single-cell-doublet-detection' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-single-cell-doublet-detection' ~/.claude/skills/'bio-single-cell-doublet-detection' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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