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bio-single-cell-cnv-inference

95 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Infer large-scale copy-number alterations from tumor single-cell or single-nucleus RNA-seq to separate malignant from normal cells and call subclones, using inferCNV, copyKAT, Numbat, and SCEVAN. Use when separating malignant from normal cells in a tumor scRNA-seq dataset, inferring chromosome-arm CNVs or aneuploidy from expression, calling tumor subclones from single cells, choosing a CNV-inference method (reference-based vs reference-free, expression-only vs allele-aware), or deciding which c…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-single-cell-cnv-inference' ] || [ -L ~/.agents/skills/'bio-single-cell-cnv-inference' ]; then echo 'A skill folder named bio-single-cell-cnv-inference already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-single-cell-cnv-inference' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-single-cell-cnv-inference' ~/.agents/skills/'bio-single-cell-cnv-inference' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-single-cell-cnv-inference' ~/.claude/skills/'bio-single-cell-cnv-inference' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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