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bio-rna-structure-secondary-structure-prediction

80 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Predicts RNA secondary structure with ViennaRNA, treating the Boltzmann ensemble (partition function, base-pair probabilities, centroid, MEA, stochastic samples) as the object rather than a single MFE fold. Covers consensus folding from alignments (RNAalifold), SHAPE-constrained folding, RNA-RNA interaction (RNAcofold/RNAduplex/RNAup), local and linear-time methods for long RNA, and pseudoknot-aware tools. Use when folding an RNA and choosing between MFE, centroid, MEA, or ensemble sampling; ju…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-rna-structure-secondary-structure-prediction' ] || [ -L ~/.agents/skills/'bio-rna-structure-secondary-structure-prediction' ]; then echo 'A skill folder named bio-rna-structure-secondary-structure-prediction already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-rna-structure-secondary-structure-prediction' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-rna-structure-secondary-structure-prediction' ~/.agents/skills/'bio-rna-structure-secondary-structure-prediction' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-rna-structure-secondary-structure-prediction' ~/.claude/skills/'bio-rna-structure-secondary-structure-prediction' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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