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bio-proteomics-peptide-identification

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Peptide-spectrum matching from MS/MS with target-decoy FDR control, framing identification confidence as a property of a ranked list (q-value/PEP) rather than a raw engine score (XCorr, hyperscore, Andromeda, SpecEValue). Covers sequence-database search engines (Comet, MS-GF+, MSFragger, Sage, MaxQuant, MetaMorpheus), concatenated vs separate target-decoy competition, PEP vs q-value, the multi-level FDR cascade, open/mass-tolerant search, rescoring (Percolator, mokapot, MS2Rescore), and pyOpenM…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-proteomics-peptide-identification' ] || [ -L ~/.agents/skills/'bio-proteomics-peptide-identification' ]; then echo 'A skill folder named bio-proteomics-peptide-identification already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-proteomics-peptide-identification' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-proteomics-peptide-identification' ~/.agents/skills/'bio-proteomics-peptide-identification' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-proteomics-peptide-identification' ~/.claude/skills/'bio-proteomics-peptide-identification' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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