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bio-proteomics-data-import

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Loads mass-spectrometry data into Python/R and strips the search engine's bookkeeping before any number is trusted -- removes decoys (REV__/Reverse), contaminants (CON__/Potential contaminant), Only-identified-by-site groups, and resolves semicolon razor/leading protein-ID ambiguity in MaxQuant proteinGroups.txt, DIA-NN report.parquet, and mzML/mzXML. Distinguishes Intensity (raw) vs LFQ intensity (MaxLFQ) vs iBAQ, treats a MaxQuant zero as missing (NaN, not log2(-inf)), and inherits the acquis…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-proteomics-data-import' ] || [ -L ~/.agents/skills/'bio-proteomics-data-import' ]; then echo 'A skill folder named bio-proteomics-data-import already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-proteomics-data-import' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-proteomics-data-import' ~/.agents/skills/'bio-proteomics-data-import' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-proteomics-data-import' ~/.claude/skills/'bio-proteomics-data-import' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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