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bio-population-genetics-scikit-allel-analysis

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

In-memory Python population genetics with scikit-allel - GenotypeArray/HaplotypeArray/AlleleCountsArray, diversity (pi, theta, Tajima's D), SFS, FST (Weir-Cockerham, Hudson, Patterson), f3/D admixture stats, LD pruning, PCA, and selection scans (iHS, XP-EHH, nSL, Garud H). Nearly every statistic is a ratio or density with one silent denominator bug in two faces: omit is_accessible= and per-base pi/theta divide by total span not accessible bp (deflated 2-5x); average per-SNP FST instead of sum(a…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-population-genetics-scikit-allel-analysis' ] || [ -L ~/.agents/skills/'bio-population-genetics-scikit-allel-analysis' ]; then echo 'A skill folder named bio-population-genetics-scikit-allel-analysis already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-population-genetics-scikit-allel-analysis' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-population-genetics-scikit-allel-analysis' ~/.agents/skills/'bio-population-genetics-scikit-allel-analysis' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-population-genetics-scikit-allel-analysis' ~/.claude/skills/'bio-population-genetics-scikit-allel-analysis' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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