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bio-population-genetics-plink-basics

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Manages PLINK genotype filesets - format conversion (VCF, BED/BIM/FAM, PED/MAP, pgen/pvar/psam) and sample/variant QC (missingness, MAF, HWE, sex check, heterozygosity, KING relatedness) with PLINK 1.9 and 2.0. PLINK rewrites allele bookkeeping: PLINK 1.x A1 defaults to the minor allele and is recomputed every load, silently flipping effect-allele meaning unless --keep-allele-order, while PLINK 2.0 tracks explicit REF/ALT. QC order matters (variant before sample missingness), HWE is controls-on…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-population-genetics-plink-basics' ] || [ -L ~/.agents/skills/'bio-population-genetics-plink-basics' ]; then echo 'A skill folder named bio-population-genetics-plink-basics already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-population-genetics-plink-basics' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-population-genetics-plink-basics' ~/.agents/skills/'bio-population-genetics-plink-basics' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-population-genetics-plink-basics' ~/.claude/skills/'bio-population-genetics-plink-basics' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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