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bio-pileup-generation

75 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Generate pileup data for variant calling using samtools mpileup and pysam. Use when preparing data for variant calling, analyzing per-position read data, or calculating allele frequencies.

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (data) that look related. Check that one does what you need.

• 80 Low riskbio-alignment-validationdiegosouzapw/awesome-omni-skill · 66 stars
• 82 Low riskpolars-bioClawBio/ClawBio · 1,182 stars
• 80 Low riskbio-read-qc-quality-reportsdiegosouzapw/awesome-omni-skill · 66 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-pileup-generation' ] || [ -L ~/.agents/skills/'bio-pileup-generation' ]; then echo 'A skill folder named bio-pileup-generation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-pileup-generation' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-pileup-generation' ~/.agents/skills/'bio-pileup-generation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-pileup-generation' ~/.claude/skills/'bio-pileup-generation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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