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bio-phylo-modern-tree-inference

95 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Infers maximum-likelihood phylogenetic trees with IQ-TREE2 and RAxML-NG -- model selection (ModelFinder), branch support (UFBoot2, SH-aLRT), concordance factors (gCF/sCF), partitioning, topology tests, and long-branch-attraction control. Covers why an ML tree inherits every flaw of the assumed model and the fixed alignment, why reported support measures repeatability under resampling and not correctness, why UFBoot uses a >=95 cutoff and not the bootstrap-70 rule, and why a node with UFBoot 100…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-phylo-modern-tree-inference' ] || [ -L ~/.agents/skills/'bio-phylo-modern-tree-inference' ]; then echo 'A skill folder named bio-phylo-modern-tree-inference already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-phylo-modern-tree-inference' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-phylo-modern-tree-inference' ~/.agents/skills/'bio-phylo-modern-tree-inference' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-phylo-modern-tree-inference' ~/.claude/skills/'bio-phylo-modern-tree-inference' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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