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bio-phasing-imputation-reference-panels

100 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Selects and prepares the reference panel that phasing/imputation copies haplotypes from (1000 Genomes, HRC, TOPMed, HGDP+1kGP/gnomAD, CAAPA), matching panel ancestry to the target, reconciling genome build and chromosome naming, and running the strand/allele harmonization gate. Covers why ancestry-match beats panel size (imputation can only copy haplotypes the panel contains), why palindromic A/T and C/G SNPs flip strand without erroring, why liftover is a strand-flip generator in between-build…

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-phasing-imputation-reference-panels' ] || [ -L ~/.agents/skills/'bio-phasing-imputation-reference-panels' ]; then echo 'A skill folder named bio-phasing-imputation-reference-panels already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-phasing-imputation-reference-panels' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-phasing-imputation-reference-panels' ~/.agents/skills/'bio-phasing-imputation-reference-panels' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-phasing-imputation-reference-panels' ~/.claude/skills/'bio-phasing-imputation-reference-panels' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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