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bio-paired-end-fastq

85 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Handle paired-end FASTQ files (R1/R2) using Biopython while keeping mates synchronized. Use when working with Illumina paired reads, synchronizing pairs, filtering both mates together with orphan routing, interleaving/deinterleaving, or matching mates by read name.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-paired-end-fastq' ] || [ -L ~/.agents/skills/'bio-paired-end-fastq' ]; then echo 'A skill folder named bio-paired-end-fastq already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-paired-end-fastq' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-paired-end-fastq' ~/.agents/skills/'bio-paired-end-fastq' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-paired-end-fastq' ~/.claude/skills/'bio-paired-end-fastq' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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