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bio-multi-omics-data-harmonization

100 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Harmonizes already-normalized per-omic matrices onto a common footing before joint integration - assembling a MultiAssayExperiment, choosing the per-omic variance-stabilizing transform, deciding per-view versus per-feature scaling, picking a cross-omic batch strategy, and triaging missing data (feature, value, or whole sample; MAR versus MNAR). Covers why a shared-latent integrator is blind to what an omic is so scaling silently decides which block dominates, why batch confounded with biology i…

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-multi-omics-data-harmonization' ] || [ -L ~/.agents/skills/'bio-multi-omics-data-harmonization' ]; then echo 'A skill folder named bio-multi-omics-data-harmonization already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-multi-omics-data-harmonization' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-multi-omics-data-harmonization' ~/.agents/skills/'bio-multi-omics-data-harmonization' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-multi-omics-data-harmonization' ~/.claude/skills/'bio-multi-omics-data-harmonization' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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