← All skills

bio-microbiome-qiime2-workflow

97 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By lilinji/GeneTind-Life-Skills (GitHub) · coding · 17 stars · scanned at commit 908229c

Operates the QIIME2 framework as the glue for an amplicon analysis - the .qza/.qzv artifact model, semantic types (FeatureTable[Frequency], SampleData[PairedEndSequencesWithQuality], Phylogeny[Rooted], FeatureData[Taxonomy]), embedded provenance plus provenance replay, import (Casava/manifest/EMP/BIOM), export, the Metadata object, and the q2cli vs Artifact API interfaces. Covers why a .qza is data-plus-executable-history not a file, why export drops provenance, why a .qzv is terminal, why clas…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-microbiome-qiime2-workflow' ] || [ -L ~/.agents/skills/'bio-microbiome-qiime2-workflow' ]; then echo 'A skill folder named bio-microbiome-qiime2-workflow already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-microbiome-qiime2-workflow' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-microbiome-qiime2-workflow' ~/.agents/skills/'bio-microbiome-qiime2-workflow' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-microbiome-qiime2-workflow' ~/.claude/skills/'bio-microbiome-qiime2-workflow' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for lilinji/GeneTind-Life-Skills shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/lilinji/GeneTind-Life-Skills.svg)](https://zalavijaysinh.github.io/skilltrust/repos/lilinji/GeneTind-Life-Skills/)

Score history