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bio-metagenomics-amr-detection

95 / 100 · Low risk

Fine to try.

By lilinji/GeneTind-Life-Skills (GitHub) · other · 17 stars · scanned at commit 908229c

Profiles the antimicrobial-resistance gene content (resistome) of shotgun metagenomes - read-based quantification with RGI bwt, AMR++/MEGARes, ARGs-OAP/SARG, deepARG, or GROOT, and presence calling with AMRFinderPlus/ABRicate on assembled contigs or MAGs. Covers why an ARG hit is a sequence match not a phenotype, why a metagenomic ARG has no host and no genomic context until assembly (and assembly breaks at ARGs), per-gene curated thresholds vs a flat 80/80, gene-fraction false-positive control…

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-metagenomics-amr-detection' ] || [ -L ~/.agents/skills/'bio-metagenomics-amr-detection' ]; then echo 'A skill folder named bio-metagenomics-amr-detection already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-metagenomics-amr-detection' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-metagenomics-amr-detection' ~/.agents/skills/'bio-metagenomics-amr-detection' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-metagenomics-amr-detection' ~/.claude/skills/'bio-metagenomics-amr-detection' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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