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bio-chipseq-chromatin-state-segmentation

77 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By lilinji/GeneTind-Life-Skills (GitHub) · data · 17 stars · scanned at commit 908229c

Segments the genome into chromatin states from combinatorial histone modification and chromatin factor ChIP-seq data. Uses ChromHMM (multivariate HMM on binarized signal, v1.27), Segway (Dynamic Bayesian Network on continuous signal), EpiSegMix (flexible-distribution HMM with duration modeling, 2024), EpiLogos (multi-biosample visualization), IDEAS (cell-type-aware joint), and full-stack ChromHMM (Vu Ernst 2022) for cross-cell-type segmentations. Handles state-count selection (15 vs 18 vs 25 st…

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (data) that look related. Check that one does what you need.

• 80 Low riskchromatin-state-inferencediegosouzapw/awesome-omni-skill · 66 stars
• 80 Low riskChIPseq-QCdiegosouzapw/awesome-omni-skill · 66 stars
• 80 Low riskbio-atac-seq-atac-peak-callingdiegosouzapw/awesome-omni-skill · 66 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-chipseq-chromatin-state-segmentation' ] || [ -L ~/.agents/skills/'bio-chipseq-chromatin-state-segmentation' ]; then echo 'A skill folder named bio-chipseq-chromatin-state-segmentation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lilinji/GeneTind-Life-Skills' "$d" && git -C "$d" checkout --quiet '908229c955510a1841b216e8bf58f6b22818d4dc' -- 'skills/bio-chipseq-chromatin-state-segmentation' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/bio-chipseq-chromatin-state-segmentation' ~/.agents/skills/'bio-chipseq-chromatin-state-segmentation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-chipseq-chromatin-state-segmentation' ~/.claude/skills/'bio-chipseq-chromatin-state-segmentation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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