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scvi-tools

80 / 100 · Low risk

Fine to try.

By lifangda/claude-plugins (GitHub) · data · 43 stars · scanned at commit 76d90e8

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scvi-tools' ] || [ -L ~/.agents/skills/'scvi-tools' ]; then echo 'A skill folder named scvi-tools already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lifangda/claude-plugins' "$d" && git -C "$d" checkout --quiet '76d90e8304f792a3c98ddd4172ec7ec59b1e656f' -- 'cli-tool/skills-library/scientific-computing/bioinformatics/scvi-tools' && mkdir -p ~/.agents/skills && cp -R "$d"/'cli-tool/skills-library/scientific-computing/bioinformatics/scvi-tools' ~/.agents/skills/'scvi-tools' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scvi-tools' ~/.claude/skills/'scvi-tools' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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