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scanpy

95 / 100 · Low risk

Fine to try.

By lifangda/claude-plugins (GitHub) · data · 43 stars · scanned at commit 76d90e8

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Runs commands on your computer

The author does not mention this.

Found in 3 places.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scanpy' ] || [ -L ~/.agents/skills/'scanpy' ]; then echo 'A skill folder named scanpy already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lifangda/claude-plugins' "$d" && git -C "$d" checkout --quiet '76d90e8304f792a3c98ddd4172ec7ec59b1e656f' -- 'cli-tool/skills-library/scientific-computing/bioinformatics/scanpy' && mkdir -p ~/.agents/skills && cp -R "$d"/'cli-tool/skills-library/scientific-computing/bioinformatics/scanpy' ~/.agents/skills/'scanpy' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scanpy' ~/.claude/skills/'scanpy' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

DateVersionScore
2026-11-0776d90e895

Also found in

Identical copies of this skill exist at: