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zinc-database
77 / 100 · Review before installing
Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.
By lamm-mit/scienceclaw (GitHub) · data · 251 stars · scanned at commit 894598c
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: cartblanche22.docking.org
This is disclosed by the author in the skill's SKILL.md or README. Expected for a data skill.
Found in 35 places.
Show 17 more
- skills/zinc-database/SKILL.md, line 93
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1" - skills/zinc-database/SKILL.md, line 98
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1&dist=3&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/SKILL.md, line 109
curl "https://cartblanche22.docking.org/catitems.txt:catitem_id=SUPPLIER-CODE-123" - skills/zinc-database/SKILL.md, line 125
curl "https://cartblanche22.docking.org/substance/random.txt:count=100" - skills/zinc-database/SKILL.md, line 135
curl "https://cartblanche22.docking.org/substance/random.txt:count=1000&subset=lead-like&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/SKILL.md, line 147
curl "https://cartblanche22.docking.org/substance/random.txt:count=10000&subset=drug-like&output_fields=zinc_id,smiles,tranche" > docking_library.txt - skills/zinc-database/SKILL.md, line 173
curl "https://cartblanche22.docking.org/smiles.txt:smiles=CC(C)Cc1ccc(cc1)C(C)C(=O)O&dist=5&output_fields=zinc_id,smiles,catalogs" > analogs.txt - skills/zinc-database/SKILL.md, line 201
curl "https://cartblanche22.docking.org/substances.txt:zinc_id=ZINC000000000001,ZINC000000000002&output_fields=zinc_id,smiles,supplier_code,catalogs" - skills/zinc-database/SKILL.md, line 215
curl "https://cartblanche22.docking.org/substance/random.txt:count=5000&subset=lead-like&output_fields=zinc_id,smiles,tranche" > chemical_space_sample.txt - skills/zinc-database/SKILL.md, line 234
curl "https://cartblanche22.docking.org/substances.txt:zinc_id=ZINC000000000001&output_fields=zinc_id,smiles,catalogs,tranche" - skills/zinc-database/references/api_reference.md, line 43
curl "https://cartblanche22.docking.org/[email protected]_fields=zinc_id,smiles,catalogs" - skills/zinc-database/references/api_reference.md, line 48
curl "https://cartblanche22.docking.org/substances.txt:zinc_id=ZINC000000000001,ZINC000000000002,ZINC000000000003&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/references/api_reference.md, line 54
curl -X POST "https://cartblanche22.docking.org/substances.txt?output_fields=zinc_id,smiles" \ - skills/zinc-database/references/api_reference.md, line 86
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1&output_fields=zinc_id,smiles" - skills/zinc-database/references/api_reference.md, line 91
curl "https://cartblanche22.docking.org/smiles.txt:smiles=CC(C)Cc1ccc(cc1)C(C)C(=O)O&dist=3&output_fields=zinc_id,smiles,catalogs" - skills/zinc-database/references/api_reference.md, line 96
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1&dist=5&adist=5&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/references/api_reference.md, line 103
curl "https://cartblanche22.docking.org/smiles.txt:smiles=CC%28%3DO%29Oc1ccccc1C%28%3DO%29O&dist=2"
and 15 more places
Runs commands on your computer
The author does not mention this.
Found in 20 places.
Show 17 more
- skills/zinc-database/SKILL.md, line 93
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1" - skills/zinc-database/SKILL.md, line 98
curl "https://cartblanche22.docking.org/smiles.txt:smiles=c1ccccc1&dist=3&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/SKILL.md, line 109
curl "https://cartblanche22.docking.org/catitems.txt:catitem_id=SUPPLIER-CODE-123" - skills/zinc-database/SKILL.md, line 125
curl "https://cartblanche22.docking.org/substance/random.txt:count=100" - skills/zinc-database/SKILL.md, line 135
curl "https://cartblanche22.docking.org/substance/random.txt:count=1000&subset=lead-like&output_fields=zinc_id,smiles,tranche" - skills/zinc-database/SKILL.md, line 147
curl "https://cartblanche22.docking.org/substance/random.txt:count=10000&subset=drug-like&output_fields=zinc_id,smiles,tranche" > docking_library.txt - skills/zinc-database/SKILL.md, line 173
curl "https://cartblanche22.docking.org/smiles.txt:smiles=CC(C)Cc1ccc(cc1)C(C)C(=O)O&dist=5&output_fields=zinc_id,smiles,catalogs" > analogs.txt - skills/zinc-database/SKILL.md, line 201
curl "https://cartblanche22.docking.org/substances.txt:zinc_id=ZINC000000000001,ZINC000000000002&output_fields=zinc_id,smiles,supplier_code,catalogs" - skills/zinc-database/SKILL.md, line 215
curl "https://cartblanche22.docking.org/substance/random.txt:count=5000&subset=lead-like&output_fields=zinc_id,smiles,tranche" > chemical_space_sample.txt - skills/zinc-database/SKILL.md, line 234
curl "https://cartblanche22.docking.org/substances.txt:zinc_id=ZINC000000000001&output_fields=zinc_id,smiles,catalogs,tranche" - skills/zinc-database/SKILL.md, line 280
result = subprocess.run(['curl', url], capture_output=True, text=True) - skills/zinc-database/SKILL.md, line 286
result = subprocess.run(['curl', url], capture_output=True, text=True) - skills/zinc-database/SKILL.md, line 294
result = subprocess.run(['curl', url], capture_output=True, text=True) - skills/zinc-database/references/api_reference.md, line 400
result = subprocess.run(['curl', '-s', url], - skills/zinc-database/references/api_reference.md, line 529
result = subprocess.run( - skills/zinc-database/references/api_reference.md, line 542
except (subprocess.CalledProcessError, ValueError) as e: - skills/zinc-database/references/api_reference.md, line 653
result = subprocess.run(['curl', '-v', url],
Downloads and installs other software
The author does not mention this.
Found in 1 place.
Safer alternatives
Low-risk skills in the same category (data) that look related. Check that one does what you need.
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'zinc-database' ] || [ -L ~/.agents/skills/'zinc-database' ]; then echo 'A skill folder named zinc-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lamm-mit/scienceclaw' "$d" && git -C "$d" checkout --quiet '894598cd3a90891a077c254566276bd379038bad' -- 'skills/zinc-database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/zinc-database' ~/.agents/skills/'zinc-database' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'zinc-database' ~/.claude/skills/'zinc-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
Badge for your README
The badge for lamm-mit/scienceclaw shows the score of its lowest-scoring skill.
[](https://zalavijaysinh.github.io/skilltrust/repos/lamm-mit/scienceclaw/)
Score history
| Date | Version | Score |
|---|
| 2026-11-13 | 894598c | 77 |