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uniprot-database
95 / 100 · Low risk
Fine to try.
By lamm-mit/scienceclaw (GitHub) · coding · 251 stars · scanned at commit 894598c
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
Works with any agent that supports SKILL.md skills.
What this skill can do
Sends data to these websites: rest.uniprot.org
The author does not mention this.
Found in 32 places.
Show 17 more
- skills/uniprot-database/references/api_examples.md, line 68
response = requests.post(submit_url, data=data) - skills/uniprot-database/references/api_examples.md, line 74
response = requests.get(status_url) - skills/uniprot-database/references/api_examples.md, line 82
response = requests.get(results_url) - skills/uniprot-database/references/api_examples.md, line 102
response = requests.get(url, params=params, stream=True) - skills/uniprot-database/references/api_examples.md, line 130
response = requests.get(url, params=params) - skills/uniprot-database/references/api_examples.md, line 155
curl "https://rest.uniprot.org/uniprotkb/search?query=insulin&format=json&size=5" - skills/uniprot-database/references/api_examples.md, line 161
curl "https://rest.uniprot.org/uniprotkb/P01308.fasta" - skills/uniprot-database/references/api_examples.md, line 167
curl "https://rest.uniprot.org/uniprotkb/search?query=gene:BRCA1&format=tsv&fields=accession,gene_names,length" - skills/uniprot-database/references/api_examples.md, line 173
curl -X POST "https://rest.uniprot.org/idmapping/run" \ - skills/uniprot-database/references/api_examples.md, line 181
curl "https://rest.uniprot.org/idmapping/results/JOB_ID" - skills/uniprot-database/references/api_examples.md, line 187
curl "https://rest.uniprot.org/uniprotkb/stream?query=organism_id:9606+AND+reviewed:true&format=fasta" \ - skills/uniprot-database/references/api_examples.md, line 253
const response = await fetch(url); - skills/uniprot-database/references/api_examples.md, line 269
const response = await fetch(url); - skills/uniprot-database/references/api_examples.md, line 294
const submitResponse = await fetch(submitUrl, { - skills/uniprot-database/references/api_examples.md, line 303
const statusResponse = await fetch(statusUrl); - skills/uniprot-database/references/api_examples.md, line 315
const resultsResponse = await fetch(resultsUrl); - skills/uniprot-database/references/api_examples.md, line 356
response = requests.get(
and 12 more places
Install
Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.
if [ -e ~/.agents/skills/'uniprot-database' ] || [ -L ~/.agents/skills/'uniprot-database' ]; then echo 'A skill folder named uniprot-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lamm-mit/scienceclaw' "$d" && git -C "$d" checkout --quiet '894598cd3a90891a077c254566276bd379038bad' -- 'skills/uniprot-database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/uniprot-database' ~/.agents/skills/'uniprot-database' && rm -rf "$d"; fi
Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'uniprot-database' ~/.claude/skills/'uniprot-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.
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Score history
| Date | Version | Score |
|---|
| 2026-11-13 | 894598c | 95 |