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pydeseq2

80 / 100 · Low risk

Fine to try. Some of what it can do is expected: a coding skill usually runs build and test commands.

By lamm-mit/scienceclaw (GitHub) · coding · 251 stars · scanned at commit 894598c

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'pydeseq2' ] || [ -L ~/.agents/skills/'pydeseq2' ]; then echo 'A skill folder named pydeseq2 already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/lamm-mit/scienceclaw' "$d" && git -C "$d" checkout --quiet '894598cd3a90891a077c254566276bd379038bad' -- 'skills/pydeseq2' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/pydeseq2' ~/.agents/skills/'pydeseq2' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'pydeseq2' ~/.claude/skills/'pydeseq2' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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