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ngs-amplicon-microbiome

95 / 100 · Low risk

Fine to try.

By kael-odin/codex-plugins-zh (GitHub) · other · 37 stars · scanned at commit e3091d1

Kick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ngs-amplicon-microbiome' ] || [ -L ~/.agents/skills/'ngs-amplicon-microbiome' ]; then echo 'A skill folder named ngs-amplicon-microbiome already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/kael-odin/codex-plugins-zh' "$d" && git -C "$d" checkout --quiet 'e3091d1b371a9dcd9455d333175f948b286fdfcf' -- 'plugins/ngs-analysis/skills/ngs-amplicon-microbiome' && mkdir -p ~/.agents/skills && cp -R "$d"/'plugins/ngs-analysis/skills/ngs-amplicon-microbiome' ~/.agents/skills/'ngs-amplicon-microbiome' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ngs-amplicon-microbiome' ~/.claude/skills/'ngs-amplicon-microbiome' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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