scvelo

82 / 100 · Low risk

Fine to try.

By K-Dense-AI/claude-scientific-skills (GitHub) · data · 57,146 stars · scanned at commit 2d2065f

Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene phase portraits, builds velocity graphs, estimates relative latent time, and ranks velocity-associated genes. Use for directional trajectory hypotheses and kinetic-model diagnostics alongside Scanpy; velocity alone does not establish cell fate or causal drivers.

Works with any agent that supports SKILL.md skills.

What this skill can do

Runs commands on your computer

This is disclosed by the author in the skill's SKILL.md or README.

Found in 2 places.

skills/scvelo/SKILL.md, line 33uv venv --python 3.13 .venv-velocity
skills/scvelo/SKILL.md, line 93MPLBACKEND=Agg .venv-velocity/bin/python scripts/rna_velocity_workflow.py \

Downloads and installs other software

The author does not mention this.

Found in 1 place.

skills/scvelo/SKILL.md, line 34uv pip install --python .venv-velocity/bin/python \

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scvelo' ] || [ -L ~/.agents/skills/'scvelo' ]; then echo 'A skill folder named scvelo already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/K-Dense-AI/claude-scientific-skills' "$d" && git -C "$d" checkout --quiet '2d2065fb4520fa3f3f2bcf61cff26ec8b7eba4b5' -- 'skills/scvelo' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/scvelo' ~/.agents/skills/'scvelo' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scvelo' ~/.claude/skills/'scvelo' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Date	Version	Score
2026-11-10	`2d2065f`	82
2026-11-08	`a25cf9e`	82
2026-11-07	`a25cf9e`	82

Also found in

Identical copies of this skill exist at:

K-Dense-AI/scientific-agent-skills/skills/scvelo