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arboreto

80 / 100 · Low risk

Fine to try.

By K-Dense-AI/claude-scientific-skills (GitHub) · data · 57,146 stars · scanned at commit 2d2065f

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse expression inputs, and network stability checks.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'arboreto' ] || [ -L ~/.agents/skills/'arboreto' ]; then echo 'A skill folder named arboreto already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/K-Dense-AI/claude-scientific-skills' "$d" && git -C "$d" checkout --quiet '2d2065fb4520fa3f3f2bcf61cff26ec8b7eba4b5' -- 'skills/arboreto' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/arboreto' ~/.agents/skills/'arboreto' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'arboreto' ~/.claude/skills/'arboreto' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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Score history

Also found in

Identical copies of this skill exist at:

• K-Dense-AI/scientific-agent-skills/skills/arboreto