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mouse-phenome-database

77 / 100 · Review before installing

Check before installing. Some of what it can do is expected: a data skill usually connects to databases or online services with your credentials.

By jaechang-hits/SciAgent-Skills (GitHub) · data · 388 stars · scanned at commit 65d6ceb

Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. Browse 520+ projects, look up per-project measure metadata, pull strain-level means (raw or LS-mean adjusted) and per-animal values, find measures by MP/VT ontology terms, and resolve strain nomenclature or gene coordinates. Use for QTL support, cross-strain comparison, mouse model selection, and ontology-driven phenotype discovery. Use monarch-database for disease-gene-phenotype knowledge g…

Works with any agent that supports SKILL.md skills.

What this skill can do

Safer alternatives

Low-risk skills in the same category (data) that look related. Check that one does what you need.

• 100 Low riskmonarch-databaselamm-mit/scienceclaw · 251 stars
• 90 Low riskena-databaseaipoch/openscience-specialist-marketplace · 10 stars
• 95 Low riskmetabolomics-workbench-databaselamm-mit/scienceclaw · 251 stars

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'mouse-phenome-database' ] || [ -L ~/.agents/skills/'mouse-phenome-database' ]; then echo 'A skill folder named mouse-phenome-database already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/jaechang-hits/SciAgent-Skills' "$d" && git -C "$d" checkout --quiet '65d6ceb875e20b751ffb3a6d8ee19516558789e1' -- 'skills/genomics-bioinformatics/databases/mouse-phenome-database' && mkdir -p ~/.agents/skills && cp -R "$d"/'skills/genomics-bioinformatics/databases/mouse-phenome-database' ~/.agents/skills/'mouse-phenome-database' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'mouse-phenome-database' ~/.claude/skills/'mouse-phenome-database' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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