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single-cell-annotation

100 / 100 · Low risk

Fine to try.

By jaechang-hits/SciAgent-Skills (GitHub) · coding · 388 stars · scanned at commit 65d6ceb

Best practices for single-cell RNA-seq cell type annotation including marker-based, reference-based, and automated classification approaches.

Works with any agent that supports SKILL.md skills.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'single-cell-annotation' ] || [ -L ~/.agents/skills/'single-cell-annotation' ]; then echo 'A skill folder named single-cell-annotation already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/jaechang-hits/SciAgent-Skills' "$d" && git -C "$d" checkout --quiet '65d6ceb875e20b751ffb3a6d8ee19516558789e1' -- 'legacy/single-cell-annotation' && mkdir -p ~/.agents/skills && cp -R "$d"/'legacy/single-cell-annotation' ~/.agents/skills/'single-cell-annotation' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'single-cell-annotation' ~/.claude/skills/'single-cell-annotation' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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