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sample-metadata-annotation-for-lcms

100 / 100 · Low risk

Fine to try.

By HolobiomicsLab/asb-skill-collections (GitHub) · coding · 16 stars · scanned at commit bf028f4

Use when when you have loaded centroided .mzML files into a Spectra object and plan to use TARDIS (tardisPeaks) with an MsExperiment object rather than file paths, and you need TARDIS to distinguish QC runs from sample runs for separate quality metric calculation, polarity filtering, and.

Works with any agent that supports SKILL.md skills.

This skill is no longer available at its GitHub address. The information below is from the last time we could read it and may be out of date.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'sample-metadata-annotation-for-lcms' ] || [ -L ~/.agents/skills/'sample-metadata-annotation-for-lcms' ]; then echo 'A skill folder named sample-metadata-annotation-for-lcms already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/HolobiomicsLab/asb-skill-collections' "$d" && git -C "$d" checkout --quiet 'bf028f481d363bb69a4047acecffccb62ea40705' -- 'collections/metabolomics/v1/skills/sample-metadata-annotation-for-lcms' && mkdir -p ~/.agents/skills && cp -R "$d"/'collections/metabolomics/v1/skills/sample-metadata-annotation-for-lcms' ~/.agents/skills/'sample-metadata-annotation-for-lcms' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'sample-metadata-annotation-for-lcms' ~/.claude/skills/'sample-metadata-annotation-for-lcms' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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