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scatac-seq-peak-matrix-export

100 / 100 · Low risk

Fine to try.

By HolobiomicsLab/asb-skill-collections (GitHub) · coding · 16 stars · scanned at commit bf028f4

Use when after completing peak calling and cell annotation in an ArchR project, when you intend to perform trajectory analysis using STREAM rather than ArchR's native monocle3 or Slingshot integrations, or when you need to share peak-by-cell matrices with collaborators using STREAM pipelines.

Works with any agent that supports SKILL.md skills.

This skill is no longer available at its GitHub address. The information below is from the last time we could read it and may be out of date.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'scatac-seq-peak-matrix-export' ] || [ -L ~/.agents/skills/'scatac-seq-peak-matrix-export' ]; then echo 'A skill folder named scatac-seq-peak-matrix-export already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/HolobiomicsLab/asb-skill-collections' "$d" && git -C "$d" checkout --quiet 'bf028f481d363bb69a4047acecffccb62ea40705' -- 'collections/epigenomics/v1/skills/scatac-seq-peak-matrix-export' && mkdir -p ~/.agents/skills && cp -R "$d"/'collections/epigenomics/v1/skills/scatac-seq-peak-matrix-export' ~/.agents/skills/'scatac-seq-peak-matrix-export' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'scatac-seq-peak-matrix-export' ~/.claude/skills/'scatac-seq-peak-matrix-export' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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