← All skills

illumina-methylation-array-preprocessing

100 / 100 · Low risk

Fine to try.

By HolobiomicsLab/asb-skill-collections (GitHub) · coding · 16 stars · scanned at commit bf028f4

Use when your input is raw .idat files or a beta-valued matrix from Illumina HumanMethylation450 or EPIC arrays, and you need to remove unreliable probes (those with detection p-value > 0.01 or insufficient bead counts) before performing differential methylation or other downstream analyses.

Works with any agent that supports SKILL.md skills.

This skill is no longer available at its GitHub address. The information below is from the last time we could read it and may be out of date.

What this skill can do

We found nothing in the files we read that matches our rules. That does not prove the skill is safe: see the limits of static scanning.

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'illumina-methylation-array-preprocessing' ] || [ -L ~/.agents/skills/'illumina-methylation-array-preprocessing' ]; then echo 'A skill folder named illumina-methylation-array-preprocessing already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/HolobiomicsLab/asb-skill-collections' "$d" && git -C "$d" checkout --quiet 'bf028f481d363bb69a4047acecffccb62ea40705' -- 'collections/epigenomics/v1/skills/illumina-methylation-array-preprocessing' && mkdir -p ~/.agents/skills && cp -R "$d"/'collections/epigenomics/v1/skills/illumina-methylation-array-preprocessing' ~/.agents/skills/'illumina-methylation-array-preprocessing' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'illumina-methylation-array-preprocessing' ~/.claude/skills/'illumina-methylation-array-preprocessing' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

Badge for your README

The badge for HolobiomicsLab/asb-skill-collections shows the score of its lowest-scoring skill.

[![SkillTrust](https://zalavijaysinh.github.io/skilltrust/badges/HolobiomicsLab/asb-skill-collections.svg)](https://zalavijaysinh.github.io/skilltrust/repos/HolobiomicsLab/asb-skill-collections/)

Score history