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bio-nextflow-manager

95 / 100 · Low risk

Fine to try.

By frumu-ai/tandem (GitHub) · productivity · 126 stars · scanned at commit 4909987

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'bio-nextflow-manager' ] || [ -L ~/.agents/skills/'bio-nextflow-manager' ]; then echo 'A skill folder named bio-nextflow-manager already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/frumu-ai/tandem' "$d" && git -C "$d" checkout --quiet '490998714f4bebef2078526aa3866d6bf73baa87' -- 'apps/tandem-desktop/src-tauri/resources/skill-templates/bio-nextflow-manager' && mkdir -p ~/.agents/skills && cp -R "$d"/'apps/tandem-desktop/src-tauri/resources/skill-templates/bio-nextflow-manager' ~/.agents/skills/'bio-nextflow-manager' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'bio-nextflow-manager' ~/.claude/skills/'bio-nextflow-manager' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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