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ncbi-sequence-fetch

80 / 100 · Low risk

Fine to try.

By franklee16/academic-research-skills (GitHub) · other · 234 stars · scanned at commit 9a4b2db

Retrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search. Use when you need to fetch biological sequences by accession, gene name, locus tag, PubMed ID, or patent number.

Works with any agent that supports SKILL.md skills.

What this skill can do

Install

Paste this into your terminal. It downloads exactly the version we scanned, not whatever is newest.

if [ -e ~/.agents/skills/'ncbi-sequence-fetch' ] || [ -L ~/.agents/skills/'ncbi-sequence-fetch' ]; then echo 'A skill folder named ncbi-sequence-fetch already exists — not replacing it' >&2; false; else d=$(mktemp -d) && git clone --quiet --filter=blob:none --no-checkout 'https://github.com/franklee16/academic-research-skills' "$d" && git -C "$d" checkout --quiet '9a4b2db21fc4b217136ae4a0e6faad42d179ca03' -- 'science-skills/ncbi_sequence_fetch' && mkdir -p ~/.agents/skills && cp -R "$d"/'science-skills/ncbi_sequence_fetch' ~/.agents/skills/'ncbi-sequence-fetch' && rm -rf "$d"; fi

Codex reads ~/.agents/skills directly. For Claude Code, Cursor, Copilot, Gemini CLI, Antigravity or OpenCode, also link it. For Claude Code: ln -s ~/.agents/skills/'ncbi-sequence-fetch' ~/.claude/skills/'ncbi-sequence-fetch' (other agents: ~/.cursor/skills, ~/.copilot/skills, ~/.gemini/skills, ~/.gemini/config/skills, ~/.config/opencode/skills). Or install through the finder skill, which does both.

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